The Birth-death incomplete sampling stadler2009 includes random sampling in the birth–death process model. There are two scenarios: either (i) each individual is sampled in the complete birth–death tree with probability conditioning that the tree after sampling has n leaves (birth–death process), or (ii) given a tree on m individuals, n of these individuals are sampled uniformly at random (birth–death process).
|BEAST 2 implementation||stadler2009|
|BEAST 1 implementation||gernhard2008|
|Theory||stadler2009 , gernhard2008|
|BEAST2 source code||core|