BEAST v2.5.0 Documentation: beast.app.beauti.BeautiConfig

Beauti configuration object, used to find Beauti configuration information from Beauti template files.

Inputs:

inlinePlugins, collapsedPlugins, suppressPlugins, inputLabelMap, buttonLabelMap, disableMenus, disableButtons, panel, isExpert, partitiontemplate, subtemplate, alignmentProvider

 

inlinePlugins
type: java.lang.String
comma separated list of inputs that should go inline, e.g. beast.evolution.sitemodel.SiteModel.substModel
Optional input

 

collapsedPlugins
type: java.lang.String
comma separated list of inputs that should go inline, but are initially collapsed, e.g. beast.core.MCMC.logger
Optional input

 

suppressPlugins
type: java.lang.String
comma separated list of inputs that should be suppressed. e.g. beast.core.MCMC.operator
Optional input

 

inputLabelMap
type: java.lang.String
comma separated list of inputs and their display labels separated by a '=', e.g. beast.core.MCMC.logger=Loggers
Optional input

 

buttonLabelMap
type: java.lang.String
comma separated list of buttons in dialogs and their display labels separated by a '=', e.g. beast.app.beauti.BeautiInitDlg.>> details=Edit parameters
Optional input

 

disableMenus
type: java.lang.String
comma separated list of menus that should not be visible, e.g., View.Show Data Panel,Mode
Optional input

 

disableButtons
type: java.lang.String
comma separated list of buttons that should not be visible, e.g., beast.app.beauti.BeautiInitDlg.Analysis template:
Optional input

 

panel
type: beast.app.beauti.BeautiPanelConfig***
define custom panels and their properties
Optional input

 

isExpert
type: java.lang.Boolean
flag to indicate Beauti should start in expert mode
Optional input. Default: false

 

partitiontemplate
type: beast.app.beauti.BeautiSubTemplate
defines template used when creating a partition
Required input

 

subtemplate
type: beast.app.beauti.BeautiSubTemplate***
defines subtemplates for creating selected classes
Optional input

 

alignmentProvider
type: beast.app.beauti.BeautiAlignmentProvider***
defines providers for adding new alignments
Optional input