Random Local Clock Model.
Drummond AJ, Suchard MA (2010) Bayesian random local clocks, or one rate to rule them all. BMC biology 8, 114.
indicators, rates, tree, ratesAreMultipliers, scaling, includeRoot, clock.rate
| type: beast.core.parameter.BooleanParameter |
| the indicators associated with nodes in the tree for sampling of individual rate changes among branches. |
| Required input |
| type: beast.core.parameter.RealParameter |
| the rate parameters associated with nodes in the tree for sampling of individual rates among branches. |
| Required input |
| type: beast.evolution.tree.Tree |
| the tree this relaxed clock is associated with. |
| Required input |
| type: java.lang.Boolean |
| true if the rates should be treated as multipliers (default false). |
| Optional input. Default: false |
| type: java.lang.Boolean |
| if false, then ignore meanRate input and leave rates unscaled. |
| Optional input. Default: true |
| type: java.lang.Boolean |
| if true, then the root can take on an arbitrary rate, otherwise the root branch has rate 1.0. |
| Optional input. Default: false |
| type: beast.core.parameter.RealParameter |
| mean clock rate (defaults to 1.0) |
| Optional input |