|implemented by the following|
BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Generic tree likelihood for an alignment given a generic SiteModel, a beast tree and a branch rate model
Logable: yes, this can be used in a log.
data, tree, siteModel, branchRateModel
|sequence data for the beast.tree|
|phylogenetic beast.tree with sequence data in the leafs|
|site model for leafs in the beast.tree|
|A model describing the rates on the branches of the beast.tree.|