BEASTObject that performs calculations based on the State.
A node that can be part of the state.
Tree (the T in BEAST) representing gene beast.tree, species beast.tree, language history, or other time-beast.tree relationships among sequence data.
A tree compatible with a set of monophyletic clades and hard limits on the clade root.
Logable: yes, this can be used in a log.
calibrations, initial, trait, taxonset, nodetype, estimate
|Set of calibrated nodes|
|tree to start with|
|trait information for initializing traits (like node dates) in the tree|
|set of taxa that correspond to the leafs in the tree|
|type of the nodes in the beast.tree|
|Optional input. Default: beast.evolution.tree.Node|
|whether to estimate this item or keep constant to its initial value|
|Optional input. Default: true|