Logs tree annotated with metadata in StarBeast format
Logable: yes, this can be used in a log.
tree, popSize, popSizeTop, speciesTreePrior, treetop, metadata
 
type: beast.evolution.tree.Tree |
tree to be logged |
Required input |
 
type: beast.core.Function |
population size parameter associated with tree nodes |
Required input |
 
type: beast.core.Function |
population size parameter associated with top of tree branches, only used for non-constant *beast analysis |
Optional input |
 
type: beast.evolution.speciation.SpeciesTreePrior |
species tree prior, used to find which Population Size Function is used. If not specified, assumes 'constant' |
Optional input |
 
type: beast.evolution.speciation.TreeTopFinder |
calculates height of species tree |
Required input |
 
type: beast.core.Function*** |
meta data to be logged with the tree nodes |
Optional input |