BEAST v2.5.0 Documentation: beast.evolution.substitutionmodel.HKY

HKY85 (Hasegawa, Kishino & Yano, 1985) substitution model of nucleotide evolution.

Reference:

Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174.

doi:10.1007/BF02101694

Inputs:

kappa, frequencies

 

kappa
type: beast.core.parameter.RealParameter
kappa parameter in HKY model
Required input

 

frequencies
type: beast.evolution.substitutionmodel.Frequencies
substitution model equilibrium state frequencies
Required input