BEAST v2.5.0 Documentation: beast.evolution.substitutionmodel.MutationDeathModel

Mutation Death substitution model, can be used as Stochastic Dollo model.

Inputs:

deathprob, substmodel, frequencies

 

deathprob
type: beast.core.parameter.RealParameter
rate of death, used to calculate death probability
Required input

 

substmodel
type: beast.evolution.substitutionmodel.SubstitutionModel$Base
CTMC Model for the life states, so should have a state-space one less than this model. If not specified, ...
Optional input

 

frequencies
type: beast.evolution.substitutionmodel.Frequencies
substitution model equilibrium state frequencies
Required input