BEAST v2.5.0 Documentation: beast.evolution.substitutionmodel.TN93

TN93 (Tamura and Nei, 1993) substitution model of nucleotide evolution.

Reference:

Tamura, K., & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10(3), 512-526.

Inputs:

kappa1, kappa2, frequencies

 

kappa1
type: beast.core.parameter.RealParameter
rate of A<->G transitions
Required input

 

kappa2
type: beast.core.parameter.RealParameter
rate of C<->T transitions
Required input

 

frequencies
type: beast.evolution.substitutionmodel.Frequencies
substitution model equilibrium state frequencies
Required input