BEAST v2.5.0 Documentation: beast.evolution.tree.TreeDistribution

implemented by the following
beast.evolution.speciation.BirthDeathGernhard08Model
beast.evolution.speciation.CalibratedBirthDeathModel
beast.evolution.speciation.CalibratedYuleModel
beast.evolution.speciation.GeneTreeForSpeciesTreeDistribution
beast.evolution.speciation.SpeciesTreePrior
beast.evolution.speciation.YuleModel
beast.evolution.tree.coalescent.BayesianSkyline
beast.evolution.tree.coalescent.Coalescent

BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Distribution on a tree, typically a prior such as Coalescent or Yule

Logable: yes, this can be used in a log.

Inputs:

tree, treeIntervals

 

tree
type: beast.evolution.tree.TreeInterface
tree over which to calculate a prior or likelihood
Either this, or treeIntervals needs to be specified

 

treeIntervals
type: beast.evolution.tree.coalescent.TreeIntervals
Intervals for a phylogenetic beast tree
Either this, or tree needs to be specified