BEAST v2.5.0 Documentation: beast.evolution.tree.TreeWithMetaDataLogger

Logs tree annotated with metadata and/or rates

Logable: yes, this can be used in a log.

Inputs:

tree, metadata, branchratemodel, substitutions, dp

 

tree
type: beast.evolution.tree.Tree
tree to be logged
Required input

 

metadata
type: beast.core.Function***
meta data to be logged with the tree nodes
Optional input

 

branchratemodel
type: beast.evolution.branchratemodel.BranchRateModel$Base
rate to be logged with branches of the tree
Optional input

 

substitutions
type: java.lang.Boolean
report branch lengths as substitutions (branch length times clock rate for the branch)
Optional input. Default: false

 

dp
type: java.lang.Integer
the number of decimal places to use writing branch lengths, rates and real-valued metadata, use -1 for full precision (default = full precision)
Optional input. Default: -1