BEAST v2.7.8 Documentation: beastclassic.evolution.operators.BitFlipBSSVSOperator

Proposes a move in state space.
Flip one bit in an array of boolean bits and scale the BSSVS parameter accordingly. The hastings ratio is designed so that all subsets of vectors with the same number of 'on' bits are equiprobable.

Inputs:

indicator, mu, scaleFactor, weight

 

indicator
type: beast.base.inference.parameter.BooleanParameter
the parameter to operate a flip on.
Required input

 

mu
type: beast.base.inference.parameter.RealParameter
the rate parameter in the substitution model (mutation rate).
Required input

 

scaleFactor
type: java.lang.Double
scaling factor: larger means more bold proposals
Optional input. Default: 1.0

 

weight
type: java.lang.Double
weight with which this operator is selected
Required input