BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Distribution on a tree, typically a prior such as Coalescent or Yule
Logable: yes, this can be used in a log.
relativeDeath, lambda, mu, psi, p, hasFinalSample, r, origin, tree, treeIntervals
| type: java.lang.Boolean |
| ? ? ? ? |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| ? ? ? ? |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| ? ? ? ? |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| ? ? ? ? |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| ? ? ? ? |
| Optional input |
| type: java.lang.Boolean |
| ? ? ? ? |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| ? ? ? ? |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| ? ? ? ? |
| Optional input |
| type: beast.base.evolution.tree.TreeInterface |
| tree over which to calculate a prior or likelihood |
| Either this, or treeIntervals needs to be specified |
| type: beast.base.evolution.tree.TreeIntervals |
| Intervals for a phylogenetic beast tree |
| Either this, or tree needs to be specified |