BEAST v2.7.8 Documentation: beastclassic.evolution.substitutionmodel.GLM

BEASTObject that performs calculations based on the State.
Extracts the intervals from a tree. Points in the intervals are defined by the heights of nodes in the tree.

Logable: yes, this can be used in a log.

Inputs:

migrationGLM, NeGLM, maxRate, dimension, typeTrait, types

 

migrationGLM
type: beastclassic.evolution.substitutionmodel.GlmModel
input of migration GLM model
Required input

 

NeGLM
type: beastclassic.evolution.substitutionmodel.GlmModel
input of migration GLM model
Required input

 

maxRate
type: java.lang.Double
maximum rate used for integration
Optional input. Default: Infinity

 

dimension
type: java.lang.Integer
the number of different states. if -1, it will use the number of different types
Either this, or types needs to be specified

 

typeTrait
type: beast.base.evolution.tree.TraitSet
Type trait set. Used only by BEAUti.
Optional input

 

types
type: java.lang.String
input of the different types, can be helpful for multilocus data
Required input