BEAST v2.7.8 Documentation: beastclassic.evolution.substitutionmodel.LogLinear

BEASTObject that performs calculations based on the State.

Logable: yes, this can be used in a log.

Inputs:

covariates, scaler, indicator, clock, error, constantError

 

covariates
type: beast.base.inference.parameter.RealParameter***
input of covariates
Required input

 

scaler
type: beast.base.inference.parameter.RealParameter
input of covariates scaler
Required input

 

indicator
type: beast.base.inference.parameter.BooleanParameter
input of covariates scaler
Required input

 

clock
type: beast.base.inference.parameter.RealParameter
clock rate of the parameter
Required input

 

error
type: beast.base.inference.parameter.RealParameter
time variant error term in the GLM model for the rates
Optional input

 

constantError
type: beast.base.inference.parameter.RealParameter
time invariant error term in the GLM model for the rates
Optional input