BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
A supertree likelihood for a set of subtrees.
Logable: yes, this can be used in a log.
data, tree, beta, treeMetric
| type: beast.base.evolution.tree.Tree*** |
| list of sub trees |
| Required input |
| type: beast.base.evolution.tree.TreeInterface |
| the super tree to be estimated. |
| Required input |
| type: java.lang.Double |
| the beta function defining the rate of probability fall off with tree distance. |
| Required input |
| type: beast.base.evolution.tree.TreeMetric |
| the tree metric to use for the tree distances in the likelihood function. |
| Required input |