BEAST v2.7.8 Documentation: beastlabs.evolution.substitutionmodel.EpochSubstitutionModel

A substitution model that can change at various threshold dates.

Inputs:

model, epochDates, frequencies

 

model
type: beast.base.evolution.substitutionmodel.SubstitutionModel***
substitution models that apply for certain time intervals
Optional input

 

epochDates
type: beast.base.inference.parameter.RealParameter
list of threshold dates. The list indicates the dates at which substitution models are switched.
Required input

 

frequencies
type: beast.base.evolution.substitutionmodel.Frequencies
substitution model equilibrium state frequencies
Required input