HKY85 (Hasegawa, Kishino & Yano, 1985) substitution model of nucleotide evolution.
Lazy version of HKY85 substitution model of nucleotide evolution.
Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174.
mode, theta, kappa, frequencies
| type: beastlabs.evolution.substitutionmodel.LazyHKY$RelaxationMode |
| form of the prior distribution used for relaxation This can be [exponential, gamma, inverse_gamma] (default 'exponential') |
| Optional input |
| type: beast.base.inference.parameter.RealParameter |
| shape parameter, ignored with exponential prior |
| Optional input |
| type: beast.base.core.Function |
| kappa parameter in HKY model |
| Required input |
| type: beast.base.evolution.substitutionmodel.Frequencies |
| substitution model equilibrium state frequencies |
| Required input |