| implemented by the following |
| beastlabs.math.distributions.MultiMRCAPriors |
BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Prior over set of taxa, useful for defining multiple monophyletic constraints using a newick format
Logable: yes, this can be used in a log.
tree, newick, isBinary, robust
| type: beast.base.evolution.tree.Tree |
| the tree containing the taxon set |
| Required input |
| type: java.lang.String |
| the tree constraints specified as newick tree using polytopes, e.g. ((human,chimp,bonobo),gorilla) specifies two monophyletic constraints,one for human,chimp,bonobo' and one for 'human,chimp,bonobo,gorilla' Make sure the starting tree is compatible with these constraints. |
| Required input |
| type: java.lang.Boolean |
| flag to indicate tree is a binary tree instead of a polytopy (faster) |
| Optional input. Default: true |
| type: java.lang.Boolean |
| flag to indicate a more robust algorithm should be used (slower) |
| Optional input. Default: false |