BEAST v2.7.8 Documentation: beastlabs.prevalence.PrevalenceLikelihood

BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
likelihood of the prevalence sequence based on a set of parameters

Logable: yes, this can be used in a log.

Inputs:

beta, gamma, popSize, list

 

beta
type: beast.base.inference.parameter.RealParameter
parameter for x y z
Required input

 

gamma
type: beast.base.inference.parameter.RealParameter
parameter for x y z
Required input

 

popSize
type: beast.base.inference.parameter.IntegerParameter
parameter for x y z
Required input

 

list
type: beastlabs.prevalence.PrevalenceList
prevalence list representing infection/recovery times
Required input