BEAST v2.7.8 Documentation: beastlabs.prevalence.TreeScaleOperator

Proposes a move in state space.
This operator changes a beast.tree.
Scales a complete beast.tree.

Inputs:

scaleFactor, scaleAll, scaleAllIndependently, degreesOfFreedom, tree, list, weight

 

scaleFactor
type: java.lang.Double
scaling factor: larger means more bold proposals
Optional input. Default: 1.0

 

scaleAll
type: java.lang.Boolean
if true, all elements of a parameter (not beast.tree) are scaled, otherwise one is randomly selected
Optional input. Default: false

 

scaleAllIndependently
type: java.lang.Boolean
if true, all elements of a parameter (not beast.tree) are scaled with a different factor, otherwise a single factor is used
Optional input. Default: false

 

degreesOfFreedom
type: java.lang.Integer
Degrees of freedom used in ...
Optional input. Default: 1

 

tree
type: beast.base.evolution.tree.Tree
beast.tree on which this operation is performed
Required input

 

list
type: beastlabs.prevalence.PrevalenceList
raw prevalence list with only times and actions
Required input

 

weight
type: java.lang.Double
weight with which this operator is selected
Required input