BEAST v2.7.8 Documentation: beastlabs.tools.TraceStateNodeSource

Source of state node parameter values for post hoc analysis

Inputs:

trace, value, state

 

trace
type: beastfx.app.util.LogFile
Trace logs containing parameter settings. First trace log should contain posterior.
Optional input

 

value
type: java.lang.String
comma delimited string of map enties. Each entry maps a trace label to a state node entry. Use square brackets to indicate the dimension. For example kappa.s:dna=kappa, freq.s:dna[0]=freq.A, freq.s:dna[1]=freq.C If no index is given in brackets, the first match in the trace will be assigned to index 0 and all consecutive matches to consecutive indices, e.g. freq.s:dna[]=freq.1 is equivalent to freq.s:dna[0]=freq.1,freq.s:dna[1]=freq.2,freq.s:dna[2]=freq.3,freq.s:dna[3]=freq.4
Optional input

 

state
type: beast.base.inference.State
elements of the state space
Optional input