Entry point for running a Beast task, for instance an MCMC or other probabilistic analysis, a simulation, etc.
Analyses bModelTest log and list useful stats such as 95% HPDs of model indicators
file, prefix, burnin, modelSet, useBrowserForVisualisation
| type: beastfx.app.util.LogFile |
| trace log file containing output of a bModelTest analysis |
| Required input |
| type: java.lang.String |
| prefix of the entry in the log file containing the substitution model trace (default 'substmodel') |
| Optional input. Default: substmodel |
| type: java.lang.Integer |
| percentage of the log file to disregard as burn-in (default 10) |
| Optional input. Default: 10 |
| type: bmodeltest.evolution.substitutionmodel.NucleotideRevJumpSubstModel$ModelSet |
| Which set of models to choose, should be the same as used in the BEAST XML that generated the log file |
| Optional input |
| type: java.lang.Boolean |
| use default web browser for visualising the dot graph. Since not all browsers support all features, the alternative is to use an internal viewer, which requires an up to date Java 8 version. |
| Optional input. Default: true |