BEAST v2.7.8 Documentation: bmodeltest.evolution.operators.BMTExchangeOperator

Proposes a move in state space.
Exchange rate values such that sum remains the same

Inputs:

modelIndicator, substModel, rates, delta, autoOptimize, weight

 

modelIndicator
type: beast.base.inference.parameter.IntegerParameter
number of the model to be used
Required input

 

substModel
type: bmodeltest.evolution.substitutionmodel.NucleotideRevJumpSubstModel
model test substitution model representing the individual models
Required input

 

rates
type: beast.base.inference.parameter.RealParameter
Rate parameter which defines the transition rate matrix.
Required input

 

delta
type: java.lang.Double
Magnitude of change for two randomly picked values.
Optional input. Default: 1.0

 

autoOptimize
type: java.lang.Boolean
if true, window size will be adjusted during the MCMC run to improve mixing.
Optional input. Default: true

 

weight
type: java.lang.Double
weight with which this operator is selected
Required input