BEAST v2.7.8 Documentation: feast.fileio.TaxonSetFromTree

For identifying a single taxon
A TaxonSet is an ordered set of taxa. The order on the taxa is provided at the time of construction either from a list of taxon objects or an alignment.
Represents a TaxonSet object where the taxon names are extracted from the given tree.

Inputs:

tree, alignment, taxon

 

tree
type: beast.base.evolution.tree.Tree
Tree from which to take taxon set.
Required input

 

alignment
type: beast.base.evolution.alignment.Alignment
alignment where each sequence represents a taxon
Forbidden: must not be specified

 

taxon
type: beast.base.evolution.alignment.Taxon***
list of taxa making up the set
Optional input