Proposes a move in state space.
This operator changes a beast.tree.
SimpleDistance: Propose a new root time
Zhang, R., Drummond, A. (2020) Improving the performance of Bayesian phylogenetic inference under relaxed clock models. BMC Evol Biol 20, 54
doi:https://doi.org/10.1186/s12862-020-01609-4
twindowSize, rates, quantiles, clockModel, kernel, tree, markclades, weight
| type: java.lang.Double |
| the size of the window for proposing new node time |
| Required input |
| type: beast.base.inference.parameter.RealParameter |
| the rates associated with nodes in the tree for sampling of individual rates among branches. |
| Either this, or quantiles needs to be specified |
| type: beast.base.inference.parameter.RealParameter |
| the quantiles of each branch rate. |
| Either this, or rates needs to be specified |
| type: beast.base.evolution.branchratemodel.UCRelaxedClockModel |
| relaxed clock model used to deal with quantiles |
| Required input |
| type: beast.base.inference.operator.kernel.KernelDistribution |
| Proposal kernel for a random walk on the root node height. |
| Optional input |
| type: beast.base.evolution.tree.Tree |
| beast.tree on which this operation is performed |
| Required input |
| type: java.lang.Boolean |
| Mark all ancestors of nodes changed by the operator as changed, up to the MRCA of all nodes changed by the operator. |
| Optional input. Default: false |
| type: java.lang.Double |
| weight with which this operator is selected |
| Required input |