BEAST v2.7.8 Documentation: orc.consoperators.UcldScalerOperator

Proposes a move in state space.
For standard deviation of the lognormal distribution of branch rates in uncorrelated relaxed clock model: a scale operation on ucldstdev and proposing rates that maintain the same probability.

Inputs:

rates, quantiles, stdev, scaleFactor, distr, kernel, weight

 

rates
type: beast.base.inference.parameter.RealParameter
the rates associated with nodes in the tree for sampling of individual rates among branches.
Either this, or quantiles needs to be specified

 

quantiles
type: beast.base.inference.parameter.RealParameter
the quantiles of each branch rate.
Either this, or rates needs to be specified

 

stdev
type: beast.base.inference.parameter.RealParameter
the distribution governing the rates among branches.
Optional input

 

scaleFactor
type: java.lang.Double
scaling factor: larger means more bold proposals
Optional input. Default: 1.0

 

distr
type: beast.base.inference.distribution.ParametricDistribution
the distribution governing the rates among branches.
Required input

 

kernel
type: beast.base.inference.operator.kernel.KernelDistribution
Proposal kernel for a scale on the clock SD.
Optional input

 

weight
type: java.lang.Double
weight with which this operator is selected
Required input