BEAST v2.7.8 Documentation: orc.inference.TipRateLogger

Logs all rates associated with the leaves of a tree. Number of dimensions = number of taxa. If clock is specified then logger willlog actual rates instead of the parameter itself

Logable: yes, this can be used in a log.

Inputs:

clock, categories, rates, tree

 

clock
type: beast.base.evolution.branchratemodel.BranchRateModel
Clock model for computing rates
Optional input

 

categories
type: beast.base.inference.parameter.IntegerParameter
Vector of rate categories
Optional input

 

rates
type: beast.base.inference.parameter.RealParameter
Vector of rates/quantiles
Optional input

 

tree
type: beast.base.evolution.tree.Tree
tree for which the rates apply
Required input