BEAST v2.7.8 Documentation: sa.app.tools.SampledAncestorTreeAnalyser

Entry point for running a Beast task, for instance an MCMC or other probabilistic analysis, a simulation, etc.
utility for creating a report of ancestral nodes in a tree set

Inputs:

file, printFrequencies, printPairs, printCladeFrequencies, printTopologyCredibleSet, toStandardOutput

 

file
type: ?
tree file containing set of ancestral ancestor trees
Required input

 

printFrequencies
type: ?
show sampled ancestor frequencies in output table
Required input

 

printPairs
type: ?
show ancestor-descendant pair frequencies in output table
Required input

 

printCladeFrequencies
type: ?
show sampled ancestor clade frequencies in output table
Required input

 

printTopologyCredibleSet
type: ?
show sampled ancestor tree topology frequencies in output table
Required input

 

toStandardOutput
type: ?
print to standard output
Required input