BEAST v2.7.8 Documentation: sa.evolution.speciation.ParameterizedSABirthDeathModel

BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Distribution on a tree, typically a prior such as Coalescent or Yule
A likelihood function for speciation processes.
Calculate tree density under Birth Death Sampling Through Time Model for Epidemics that is the BDM where an individual is sampled at a time with a constant rate psi and where an individual becomes noninfectious immediately after the samplingwith a constant probability r

Reference:

Gavryushkina A, Welch D, Stadler T, Drummond AJ (2014) Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration. PLoS Comput Biol 10(12): e1003919. doi:10.1371/journal.pcbi.1003919

doi:10.1371/journal.pcbi.1003919

Logable: yes, this can be used in a log.

Inputs:

parameterization, removalProbability, rho, conditionOnSampling, conditionOnRhoSampling, conditionOnRoot, tree, treeIntervals