BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Logable: yes, this can be used in a log.
tree, taxonsetIn, taxonsetOut, stronglyMonophyletic
| type: beast.base.evolution.tree.Tree |
| tree to apply the constraint on |
| Required input |
| type: beast.base.evolution.alignment.TaxonSet |
| set of taxa inside the clade, in-taxa. |
| Required input |
| type: beast.base.evolution.alignment.TaxonSet |
| set of taxa outside the clade. If it is not specified then the in-taxa are considered to be monophyletic. |
| Optional input |
| type: java.lang.Boolean |
| is true if the most recent common ancestor of the clade is not a sampled node andtherefore has two children which both have extant descendants. Default is false. |
| Optional input. Default: false |