Logs tree annotated with metadata in StarBeast format
Logable: yes, this can be used in a log.
tree, popSize, popSizeTop, speciesTreePrior, treetop, metadata, sort
| type: beast.base.evolution.tree.Tree |
| tree to be logged |
| Required input |
| type: beast.base.core.Function |
| population size parameter associated with tree nodes |
| Required input |
| type: beast.base.core.Function |
| population size parameter associated with top of tree branches, only used for non-constant *beast analysis |
| Optional input |
| type: starbeast3.evolution.speciation.SpeciesTreePrior |
| species tree prior, used to find which Population Size Function is used. If not specified, assumes 'constant' |
| Optional input |
| type: beast.base.evolution.speciation.TreeTopFinder |
| calculates height of species tree |
| Required input |
| type: beast.base.core.Function*** |
| meta data to be logged with the tree nodes |
| Optional input |
| type: java.lang.Boolean |
| whether to sort the tree before logging. |
| Optional input. Default: true |