BEAST v2.7.8 Documentation: starbeast3.evolution.substitutionmodel.LewisMK

LewisMK subtitution model: equal rates, equal frequencies

Reference:

Lewis, P. O. (2001). A likelihood approach to estimating phylogeny from discrete morphological character data. Systematic biology, 50(6), 913-925.

doi:10.1080/106351501753462876

Inputs:

stateNumber, datatype, frequencies

 

stateNumber
type: java.lang.Integer
the number of character states
Either this, or datatype needs to be specified

 

datatype
type: beast.base.evolution.datatype.DataType
datatype, used to determine the number of states
Either this, or stateNumber needs to be specified

 

frequencies
type: beast.base.evolution.substitutionmodel.Frequencies
substitution model equilibrium state frequencies
Optional input