BEAST v2.7.8 Documentation: starbeast3.operators.NodeReheight2

Proposes a move in state space.

Tree operator which randomly changes the height of a node, then reconstructs the tree from node heights.

Inputs:

tree, taxonset, window, origin, gene, kernel, kernelDistribution, weight

 

tree
type: starbeast3.tree.SpeciesTree
the species tree
Required input

 

taxonset
type: beast.base.evolution.alignment.TaxonSet
taxon set describing species tree taxa and their gene trees
Required input

 

window
type: java.lang.Double
size of the random walk window
Optional input. Default: 10.0

 

origin
type: beast.base.inference.parameter.RealParameter
The time when the process started
Optional input

 

gene
type: starbeast3.evolution.speciation.GeneTreeForSpeciesTreeDistribution***
list of gene trees that constrain species tree movement
Optional input

 

kernel
type: starbeast3.genekernel.GTKPrior
the kernel of gene trees
Optional input

 

kernelDistribution
type: beast.base.inference.operator.kernel.KernelDistribution
provides sample distribution for proposals
Optional input

 

weight
type: java.lang.Double
weight with which this operator is selected
Required input