BEAST v2.7.8 Documentation: starbeast3.operators.PopSizeGibbsSampler

Proposes a move in state space.

Samples population sizes of constant populations for multi species coalescent model

Inputs:

popSizes, gammaprior, intervals, gene, kernel, kernelDistribution, weight

 

popSizes
type: beast.base.inference.parameter.RealParameter
constant population size parameter, one dimension for each branch of the species tree
Required input

 

gammaprior
type: beast.base.inference.distribution.ParametricDistribution
gamma distributed prior for population sizes
Required input

 

intervals
type: beast.base.evolution.tree.TreeIntervals
tree intervals for use with single tree -- should not be used if gene-attribute is used
Optional input

 

gene
type: starbeast3.evolution.speciation.GeneTreeForSpeciesTreeDistribution***
list of gene trees that constrain species tree movement
Optional input

 

kernel
type: starbeast3.genekernel.GTKPrior
the kernel of gene trees
Optional input

 

kernelDistribution
type: beast.base.inference.operator.kernel.KernelDistribution
provides sample distribution for proposals
Optional input

 

weight
type: java.lang.Double
weight with which this operator is selected
Required input