BEAST v2.7.8 Documentation: starbeast3.simulation.DirectSimulator

implemented by the following
starbeast3.simulation.SampleGeneTreeTopologyCount

Entry point for running a Beast task, for instance an MCMC or other probabilistic analysis, a simulation, etc.
Runnable for generating a fixed number of samples from a prior distributionusing direct simulation.

Inputs:

distribution, init, logger, nSamples

 

distribution
type: beast.base.inference.Distribution
Distribution to sample from via direct simulation.
Required input

 

init
type: beast.base.inference.StateNodeInitialiser***
one or more state node initilisers used for determining the start state of the chain
Optional input

 

logger
type: beast.base.inference.Logger***
Log that simulated parameters and trees can be written to.
Optional input

 

nSamples
type: java.lang.Integer
Number of independent samples to generate.
Required input