Single sequence in an alignment.
totalcount, taxon, value, uncertain
| type: java.lang.Integer |
| number of states or the number of lineages for this species in SNAPP analysis |
| Optional input |
| type: java.lang.String |
| name of this species |
| Required input |
| type: java.lang.String |
| sequence data, either encoded as a string or as comma separated list of integers, or comma separated likelihoods/probabilities for each site if uncertain=true.In either case, whitespace is ignored. |
| Required input |
| type: java.lang.Boolean |
| if true, sequence is provided as comma separated probabilities for each character, with sites separated by a semi-colons. In this formulation, gaps are coded as 1/K,...,1/K, where K is the number of states in the model. |
| Optional input |