BEASTObject that performs calculations based on the State.
An implementation of a population size function beastObject.Also note that if you are dealing with a diploid population N0 will be the number of alleles, not the number of individuals.
An effective population size function based on coalecent times from a set of trees.
Logable: yes, this can be used in a log.
populationSizes, populationIndicators, itree, type, useIntervalsMiddle
| type: beast.base.inference.parameter.RealParameter |
| population value at each point. |
| Required input |
| type: beast.base.inference.parameter.BooleanParameter |
| Include/exclude population value from the population function. |
| Required input |
| type: beast.base.evolution.tree.TreeIntervals*** |
| Coalecent intervals of this tree are used in the compound population function. |
| Required input |
| type: java.lang.String |
| Flavour of demographic: either linear or stepwise for piecewise-linear or piecewise-constant. |
| Optional input. Default: linear |
| type: java.lang.Boolean |
| When true, the demographic X axis points are in the middle of the coalescent intervals. By default they are at the beginning. |
| Optional input. Default: false |