implemented by the following |
beast.evolution.speciation.BirthDeathGernhard08Model |
BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
Distribution on a tree, typically a prior such as Coalescent or Yule
A likelihood function for speciation processes.
Pure birth model (i.e. no deaths)
Logable: yes, this can be used in a log.
birthDiffRate, originHeight, conditionalOnRoot, tree, treeIntervals
 
type: beast.core.parameter.RealParameter |
birth difference rate parameter, lambda - mu in birth/death model (diversification rate) |
Required input |
 
type: beast.core.parameter.RealParameter |
the height of the point of origin of the process |
Optional input |
 
type: java.lang.Boolean |
Whether to condition on the root (default false) |
Optional input. Default: false |
 
type: beast.evolution.tree.TreeInterface |
tree over which to calculate a prior or likelihood |
Either this, or treeIntervals needs to be specified |
 
type: beast.evolution.tree.coalescent.TreeIntervals |
Intervals for a phylogenetic beast tree |
Either this, or tree needs to be specified |