implemented by the following |

beast.evolution.speciation.BirthDeathGernhard08Model |

BEASTObject that performs calculations based on the State.

Probabilistic representation that can produce a log probability for instance for running an MCMC chain.

Distribution on a tree, typically a prior such as Coalescent or Yule

A likelihood function for speciation processes.

Pure birth model (i.e. no deaths)

Logable: yes, this can be used in a log.

birthDiffRate, originHeight, conditionalOnRoot, tree, treeIntervals

type: beast.core.parameter.RealParameter |

birth difference rate parameter, lambda - mu in birth/death model (diversification rate) |

Required input |

type: beast.core.parameter.RealParameter |

the height of the point of origin of the process |

Optional input |

type: java.lang.Boolean |

Whether to condition on the root (default false) |

Optional input. Default: false |

type: beast.evolution.tree.TreeInterface |

tree over which to calculate a prior or likelihood |

Either this, or treeIntervals needs to be specified |

type: beast.evolution.tree.coalescent.TreeIntervals |

Intervals for a phylogenetic beast tree |

Either this, or tree needs to be specified |