BEASTObject that performs calculations based on the State.
An implementation of a population size function beastObject.Also note that if you are dealing with a diploid population N0 will be the number of alleles, not the number of individuals.
An effective population size function based on coalecent times from a set of trees.
Logable: yes, this can be used in a log.
populationSizes, populationIndicators, itree, type, useIntervalsMiddle
 
type: beast.core.parameter.RealParameter |
population value at each point. |
Required input |
 
type: beast.core.parameter.BooleanParameter |
Include/exclude population value from the population function. |
Required input |
 
type: beast.evolution.tree.coalescent.TreeIntervals*** |
Coalecent intervals of this tree are used in the compound population function. |
Required input |
 
type: java.lang.String |
Flavour of demographic: either linear or stepwise for piecewise-linear or piecewise-constant. |
Optional input. Default: linear |
 
type: java.lang.Boolean |
When true, the demographic X axis points are in the middle of the coalescent intervals. By default they are at the beginning. |
Optional input. Default: false |