BEASTObject that performs calculations based on the State.
Probabilistic representation that can produce a log probability for instance for running an MCMC chain.
likelihood of a tree conditioned on a prevalence sequence
Logable: yes, this can be used in a log.
| type: java.lang.Double |
| initial start time for prevalence curve, defaults to root height times 2 |
| Optional input |
| type: beastlabs.prevalence.PrevalenceList |
| prevalence list representing infection/recovery times |
| Required input |
| type: beast.base.evolution.tree.Tree |
| beast tree associated with list |
| Required input |