BEAST v2.5.0 Documentation: beast.evolution.branchratemodel.RateStatistic

A statistic that tracks the mean, variance and coefficent of variation of rates. It has three dimensions, one for each statistic.

Logable: yes, this can be used in a log.

Inputs:

treeLikelihood, branchratemodel, tree, internal, external

 

treeLikelihood
type: beast.evolution.likelihood.GenericTreeLikelihood
TreeLikelihood containing branch rate model that provides rates for a tree
Either this, or branchratemodel needs to be specified

 

branchratemodel
type: beast.evolution.branchratemodel.BranchRateModel
model that provides rates for a tree
Either this, or treeLikelihood needs to be specified

 

tree
type: beast.evolution.tree.Tree
tree for which the rates apply
Optional input

 

internal
type: java.lang.Boolean
consider internal nodes, default true
Optional input. Default: true

 

external
type: java.lang.Boolean
consider external nodes, default true
Optional input. Default: true