Proposes a move in state space.
This operator changes a beast.tree.
Detach a clade and re-attach it at the same height somewhere else. A BEAST object can guide the moves by providing a distance between clades via the DistanceProvider interface. Clades with lower distance should be more closely related and therefore the move more likely to get accepted.
Detach and re-attach a clade as per AttachOperator, and then resample as per UniformOperator only the elements of a multi-dimensional parameter which correspond to branches which were changed.
parameter, weights, tipsOnly, topOnly, constraints, restricted, tree, markclades, weight
| type: beast.base.inference.parameter.Parameter |
| a real or integer parameter to sample individual values for |
| Required input |
| type: beastlabs.evolution.operators.DistanceProvider |
| Provide distances between clades (data, not tree based) |
| Optional input |
| type: java.lang.Boolean |
| Move only nodes attached to tips. |
| Optional input. Default: false |
| type: java.lang.Boolean |
| Consider only nodes not under any monophyly constraint. |
| Optional input. Default: false |
| type: beastlabs.math.distributions.MultiMonophyleticConstraint |
| Respect clade constraints, i.e make no moves which violate some constraint. |
| Optional input |
| type: beast.base.evolution.tree.MRCAPrior*** |
| Use only those nodes (MRCAs of some clades) |
| Optional input |
| type: beast.base.evolution.tree.Tree |
| beast.tree on which this operation is performed |
| Required input |
| type: java.lang.Boolean |
| Mark all ancestors of nodes changed by the operator as changed, up to the MRCA of all nodes changed by the operator. |
| Optional input. Default: false |
| type: java.lang.Double |
| weight with which this operator is selected |
| Required input |