Logs tree annotated with metadata and/or rates
Logable: yes, this can be used in a log.
tree, metadata, branchratemodel, substitutions, dp, sort
 
type: beast.evolution.tree.Tree |
tree to be logged |
Required input |
 
type: beast.core.Function*** |
meta data to be logged with the tree nodes |
Optional input |
 
type: beast.evolution.branchratemodel.BranchRateModel$Base |
rate to be logged with branches of the tree |
Optional input |
 
type: java.lang.Boolean |
report branch lengths as substitutions (branch length times clock rate for the branch) |
Optional input. Default: false |
 
type: java.lang.Integer |
the number of decimal places to use writing branch lengths, rates and real-valued metadata, use -1 for full precision (default = full precision) |
Optional input. Default: -1 |
 
type: java.lang.Boolean |
whether to sort the tree before logging. |
Optional input. Default: true |