Logs tree annotated with metadata and/or rates
Logable: yes, this can be used in a log.
tree, metadata, branchratemodel, substitutions, dp, sort
| type: beast.evolution.tree.Tree |
| tree to be logged |
| Required input |
| type: beast.core.Function*** |
| meta data to be logged with the tree nodes |
| Optional input |
| type: beast.evolution.branchratemodel.BranchRateModel$Base |
| rate to be logged with branches of the tree |
| Optional input |
| type: java.lang.Boolean |
| report branch lengths as substitutions (branch length times clock rate for the branch) |
| Optional input. Default: false |
| type: java.lang.Integer |
| the number of decimal places to use writing branch lengths, rates and real-valued metadata, use -1 for full precision (default = full precision) |
| Optional input. Default: -1 |
| type: java.lang.Boolean |
| whether to sort the tree before logging. |
| Optional input. Default: true |