BEASTObject that performs calculations based on the State.
Logger to report statistics of a tree
Logable: yes, this can be used in a log.
tree, ref, treelogger, bootstraps, psites, metric
| type: beast.base.evolution.tree.Tree |
| Tree to report height for. |
| Optional input |
| type: beast.base.evolution.tree.Tree |
| Reference tree to calculate distances from (default: the initial tree). |
| Optional input |
| type: beast.base.inference.Logger |
| The tree logger. This is only required if the distance to the initial tree is being calculated, and the user is resuming |
| Optional input |
| type: java.lang.Integer |
| Number of reference trees to use where each is based on a different sample of the alignment. Set to 0 to use full alignment without bootstrapping. |
| Optional input. Default: 0 |
| type: java.lang.Double |
| Proportion of sites to sample when bootstraping. Set to 0 for random number of sites per seq |
| Optional input. Default: 1.0 |
| type: beastlabs.evolution.tree.TreeDistanceLogger$metric |
| Tree distance metric (default RNNI) |
| Optional input |