Entry point for running a Beast task, for instance an MCMC or other probabilistic analysis, a simulation, etc.
Runnable for generating a fixed number of samples from a prior distributionusing direct simulation.
nGeneRange, svg, geneTree, geneTreePrior, numTopologies, distribution, init, logger, nSamples
| type: java.lang.Integer |
| Range of number of gene tree samples. |
| Required input |
| type: beastfx.app.util.OutFile |
| svg output file. if not specified, no SVG output is produced. |
| Optional input |
| type: beast.base.evolution.tree.Tree |
| the single gene tree. |
| Required input |
| type: starbeast3.evolution.speciation.GeneTreeForSpeciesTreeDistribution |
| the prior distribution behind the gene tree). |
| Required input |
| type: beast.base.inference.parameter.IntegerParameter |
| A parameter which will be populated with the number of topologies after each sample. |
| Optional input |
| type: beast.base.inference.Distribution |
| Distribution to sample from via direct simulation. |
| Required input |
| type: beast.base.inference.StateNodeInitialiser*** |
| one or more state node initilisers used for determining the start state of the chain |
| Optional input |
| type: beast.base.inference.Logger*** |
| Log that simulated parameters and trees can be written to. |
| Optional input |
| type: java.lang.Integer |
| Number of independent samples to generate. |
| Required input |