The Birth-death incomplete sampling stadler2009 includes random sampling in the birth–death process model. There are two scenarios: either (i) each individual is sampled in the complete birth–death tree with probability conditioning that the tree after sampling has n leaves (birth–death process), or (ii) given a tree on m individuals, n of these individuals are sampled uniformly at random (birth–death process).
BEAST 2 implementation | stadler2009 |
BEAST 1 implementation | gernhard2008 |
Theory | stadler2009 , gernhard2008 |
Example XML | - |
BEAST2 source code | core |