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Simulating transmission trees
December 01, 2024
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Incorporating root state prior information
November 01, 2024
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When low ESSs in Tracer can be OK
October 01, 2024
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Using the (not so) free rate model or not?
September 01, 2024
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Automatic stopping MCMC
August 01, 2024
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What is new in v2.7.7
June 24, 2024
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Simulators in BEAST
June 01, 2024
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How accurate are cubes?
May 01, 2024
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Optimising code -- the case of CCD0
April 02, 2024
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What hardware for BEAST 2
February 01, 2024
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New StarBeast3 and Speedemon tutorials
December 01, 2023
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What is new in v2.7.6
November 23, 2023
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How to beat bad mixing
November 01, 2023
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Reducing log file size
October 01, 2023
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Workshop Announcement
September 20, 2023
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Improved fixed tree and tree set support
September 01, 2023
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Forgot to log something? Do a post hoc analysis!
August 01, 2023
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What is new in v2.7.5
July 01, 2023
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Generating XML documentation
June 01, 2023
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Java directives
May 01, 2023
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What is new in v2.7.4
March 27, 2023
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The improvement of BEAUti for "sampled ancestor trees" package (SA)
March 24, 2023
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Is this the prior you want?
March 01, 2023
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Workshop Announcement -- Taming the BEAST
February 01, 2023
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Boosting BEAST on Apple silicon
January 11, 2023
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BEAST v2.6 vs v2.7 performance benchmarking
January 04, 2023
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What is new in v2.7.3
December 19, 2022
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What is new in v2.7.1
October 10, 2022
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Adding `Help me choose` info to BEAUti
October 01, 2022
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What is new in v2.7.0
September 01, 2022
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What will change in v2.7.0 for developers
August 22, 2022
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Species delimitation from multilocus or SNP data
August 01, 2022
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BEAST help me choose site
July 01, 2022
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BEAST code statistics
June 07, 2022
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Yule skyline tree prior
June 01, 2022
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BICEPS tree prior
May 01, 2022
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New Zealand open source award
April 20, 2022
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What is new in v2.6.7
April 06, 2022
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StarBeast3 -- Efficient Multispecies Coalescent Inference using Parallelised Gene Tree Operators
March 31, 2022
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Phylogeography in BEAST 2
March 01, 2022
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BEAUti template debugging tips
February 01, 2022
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Should you use the proportion invariable sites model?
December 01, 2021
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Hypothesis testing/model comparison
November 01, 2021
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Almost Distributions
October 07, 2021
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Adaptive Metropolis Coupled MCMC(MC3) revisited
September 01, 2021
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What is new in v2.6.6
August 16, 2021
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Operator tuning
July 20, 2021
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Building packages from source
June 21, 2021
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Uniform tree priors -- why not use them
May 31, 2021
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Developing efficient BEAST operators
May 24, 2021
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Understanding BEAST XML -- common errors explained
May 17, 2021
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What is new in v2.6.4
May 10, 2021
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Bactrian proposals
April 26, 2021
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Constraining trees
April 12, 2021
-
BEAST command line options
March 31, 2021
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Workshop Announcement -- Taming the BEAST
March 01, 2021
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Running BEAST on Android
February 05, 2021
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How to make state transition distribution plots (in 3 easy steps)
January 20, 2021
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ORC -- optimised relaxed clock
December 15, 2020
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OBAMA -- amino acid model
November 25, 2020
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PIQMEE -- dealing with duplicates
October 06, 2020
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What is new in v2.6.3
July 22, 2020
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Developer guide
June 20, 2020
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Should I click the estimate box in BEAUti?
May 20, 2020
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Are these tree sets the same?
April 20, 2020
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What is new in v2.6.2
March 02, 2020
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Adaptive Metropolis Coupled MCMC(MC3) works!
January 14, 2020
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Workshop Announcement -- Taming the BEAST
December 04, 2019
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Continuous geography priors
November 21, 2019
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PhD position in Auckland
October 07, 2019
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Logging ancestral sequences
October 02, 2019
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BEAST v2.6 Command line tricks
September 26, 2019
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What is new in v2.6.1
August 08, 2019
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More on increasing ESS
August 01, 2019
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Better Apps for the BEAST App Launcher
July 23, 2019
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Ascertainment correction/Sampling bias
July 18, 2019
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What is new in v2.6.0
July 08, 2019
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What will change in v2.6.0 for developers
June 24, 2019
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Tree processing, clade comparison, LTT plots, and other Apps
May 27, 2019
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The "Likelihood incorrectly calculated" message
April 29, 2019
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Workshop Announcement -- Taming the BEAST eh!
April 04, 2019
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Epoch substitution models
February 25, 2019
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What is new in v2.5.2
February 08, 2019
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Assessing temporal structure in data sets of rapidly-evolving microbes and ancient DNA
January 28, 2019
-
Postdoc and two PhD positions in Auckland!
December 05, 2018
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Workshop Announcement -- Taming the BEAST Down Under
October 14, 2018
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Nested sampling for posterior inference
October 01, 2018
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What is new in v2.5.1
September 20, 2018
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Nested sampling for model selection
September 19, 2018
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Model adequacy in phylogenetics -- introducing the TreeModelAdequacy package for BEAST2
July 24, 2018
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For package developer -- DOI is the key to your citation
July 17, 2018
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Fatal exception -- Could not find a proper state to initialise
July 04, 2018
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XML tricks
June 27, 2018
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What is new in v2.5.0
April 10, 2018
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Adding calibrations by hand
April 05, 2018
-
What will change in v2.5.0 for developers
March 26, 2018
-
Break-away Phylogeography
March 12, 2018
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10+ ways to generate BEAST XML
March 09, 2018
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What is new in v2.4.8
January 17, 2018
-
SSM v1.0.1 package is released
September 25, 2017
-
What is new in v2.4.7
July 16, 2017
-
What is new in v2.4.6
May 06, 2017
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Using R to estimate probability distribution parameters using quantiles or HPD intervals
May 05, 2017
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Two new PhD positions in the Centre for Computational Evolution!
February 21, 2017
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What is new in v2.4.5
February 02, 2017
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How to open Tracer and FigTree in macOS Sierra
January 25, 2017
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What is new in v2.4.4
November 09, 2016
-
Workshop Announcement -- Taming the BEAST in the South Pacific
October 12, 2016
-
Metropolis Coupled MCMC(MC3) works?
September 27, 2016
-
What is new in v2.4.3
August 21, 2016
-
What is new in v2.4.2
June 22, 2016
-
What is new in v2.4.1
April 25, 2016
-
BEAST 1 vs 2 performance benchmarking
April 05, 2016
-
What is new in v2.4.0 and its packages
March 13, 2016
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What will change in v2.4.0 for developers
February 04, 2016
-
What is new in v2.3.2 and its packages
December 13, 2015
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What is new in v2.3.1 and its packages
September 20, 2015
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Common problems with ancestral state reconstruction/discrete phylogeography in BEAST
July 07, 2015
-
How much data do I need for SNAPP?
June 30, 2015
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Help, BEAST acts weird! (or how to set up rates)
June 23, 2015
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Better BEAUti templates
June 16, 2015
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Sampling tip dates
June 09, 2015
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Species Delimitation with BEAST
June 02, 2015
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What is new in BEAST v2.3.0 and its packages
May 26, 2015
-
Index of 2014 posts
May 19, 2015
-
Sampled Ancestor Trees in BEAST
September 02, 2014
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Load Balancing
August 25, 2014
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The coalescent SIR model in BEAST
August 18, 2014
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BEAST on OS X trouble shooting
August 11, 2014
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BEAST Apps for the AppStore
August 04, 2014
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All about starting trees
July 28, 2014
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SNAPP handling missing data and path sampling made easier
July 21, 2014
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Path sampling with a GUI
July 14, 2014
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Setting up BEAUti with a known rate
July 07, 2014
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BEASTShell String Tricks
June 30, 2014
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BEAST package for a tree prior
June 23, 2014
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Testing with BEASTShell
June 16, 2014
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Roll your own models with BEASTShell
June 09, 2014
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Simulation Studies with BEASTShell
June 02, 2014
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Introducing BEASTShell
May 26, 2014
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Scripting languages for BEAST
May 14, 2014
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What is new in BEAST v2.1.3 and its packages
May 12, 2014
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Zipping up a package for BEAST
May 05, 2014
-
Simulation studies with BEAST 2
April 28, 2014
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BEAST 2 paper is out!
April 21, 2014
-
Programming BEAST without Java
April 14, 2014
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Checkpointing Tricks
April 07, 2014
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What is new in BEAST v2.1.2 and its packages
March 30, 2014
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On the bleeding edge with BEAST 2 -- using dev build from command line (and running BEAST faster on windows)
March 18, 2014
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Welcome
February 11, 2014
Bayesian evolutionary analysis by sampling trees
